Maseno University is the only university in the equator, it offers several undergraduate courses. Below is the full list of courses offered at the institution, fee structure and cut off points for first year students:
| # | Programme Code | Programme Name | Institution type | YEAR 1 – Programme Cost | 2022 Cutoff | 2021 Cutoff | 2020 Cutoff |
| 1 | 1229101 | BACHELOR OF ARTS (WITH IT) | PUBLIC | Ksh 122,400 | – | 22.926 | 26.996 |
| 2 | 1229107 | BACHELOR OF SCIENCE (ACTUARIAL SCIENCE, WITH IT) | PUBLIC | Ksh 244,800 | – | 31.886 | 30.848 |
| 3 | 1229108 | BACHELOR OF SCIENCE (INDUSTRIAL CHEMISTRY, WITH IT) | PUBLIC | Ksh 244,800 | – | 16.787 | 25.681 |
| 4 | 1229109 | BACHELOR OF SCIENCE (MATHEMATICAL SCIENCES, WITH IT) | PUBLIC | Ksh 244,800 | – | 27.259 | 28.604 |
| 5 | 1229112 | BACHELOR OF SCIENCE (BIOCHEMISTRY, WITH IT) | PUBLIC | Ksh 275,400 | – | 28.679 | 28.674 |
| 6 | 1229114 | BACHELOR OF SCIENCE (ANALYTICAL CHEMISTRY, WITH IT) | PUBLIC | Ksh 244,800 | – | 16.787 | 25.029 |
| 7 | 1229115 | BACHELOR OF SCIENCE (COMPUTER SCIENCE) | PUBLIC | Ksh 306,000 | – | 36.045 | 36.506 |
| 8 | 1229120 | BACHELOR OF SCIENCE (BASIC SCIENCE, WITH IT) | PUBLIC | Ksh 224,400 | – | 17.459 | 16.791 |
| 9 | 1229129 | BACHELOR OF PHARMACY, WITH IT | PUBLIC | Ksh 428,400 | – | 42.847 | 41.636 |
| 10 | 1229131 | BACHELOR OF MEDICINE AND BACHELOR OF SURGERY (WITH IT) | PUBLIC | Ksh 612,000 | – | 44.143 | 44.083 |
| 11 | 1229132 | BACHELOR OF SCIENCE (NURSING, WITH IT) | PUBLIC | Ksh 275,400 | – | 41.59 | 41.175 |
| 12 | 1229134 | BACHELOR OF LAWS (LL.B.), WITH IT | PUBLIC | Ksh 183,600 | – | – | – |
| 13 | 1229135 | BACHELOR OF EDUCATION (ARTS, WITH IT) | PUBLIC | Ksh 183,600 | – | 30.514 | 31.178 |
| 14 | 1229136 | BACHELOR OF ARTS (CRIMINOLOGY, WITH IT) | PUBLIC | Ksh 153,000 | – | 28.711 | 30.756 |
| 15 | 1229137 | BACHELOR OF EDUCATION (SCIENCE, WITH IT) | PUBLIC | Ksh 244,800 | – | 34.932 | 36.089 |
| 16 | 1229151 | BACHELOR OF SCIENCE IN MARKETING MANAGEMENT, WITH IT | PUBLIC | Ksh 183,600 | – | 22.544 | 22.361 |
| 17 | 1229153 | BACHELOR OF BUSINESS ADMINISTRATION ( WITH IT) | PUBLIC | Ksh 183,600 | – | 22.544 | 22.361 |
| 18 | 1229155 | BACHELOR OF EDUCATION (SPECIAL NEEDS EDUCATION, WITH IT) | PUBLIC | Ksh 244,800 | – | 29.942 | 32.617 |
| 19 | 1229158 | BACHELOR OF SCIENCE (INFORMATION AND COMMUNICATION TECHNOLOGY MANAGEMENT) | PUBLIC | Ksh 306,000 | – | 29.316 | 30.112 |
| 20 | 1229161 | BACHELOR OF ARTS (MUSIC, WITH IT) | PUBLIC | Ksh 204,000 | – | 23.07 | 23.64 |
| 21 | 1229162 | BACHELOR OF EDUCATION (MUSIC, WITH IT) | PUBLIC | Ksh 183,600 | – | 22.636 | 24.285 |
| 22 | 1229164 | BACHELOR OF SCIENCE (APPLIED STATISTICS, WITH IT) | PUBLIC | Ksh 244,800 | – | 20.1 | 28.264 |
| 23 | 1229166 | BACHELOR OF EDUCATION (FRENCH, WITH IT) | PUBLIC | Ksh 183,600 | – | 22.636 | 28.783 |
| 24 | 1229170 | BACHELOR OF SCIENCE (PHYSICS, WITH IT) | PUBLIC | Ksh 244,800 | – | 17.459 | 22.415 |
| 25 | 1229179 | BACHELOR OF ARTS (DRAMA AND THEATRE STUDIES, WITH IT) | PUBLIC | Ksh 204,000 | – | 22.926 | 27.182 |
| 26 | 1229180 | BACHELOR OF EDUCATION (EARLY CHILDHOOD EDUCATION, WITH IT) | PUBLIC | Ksh 183,600 | – | 22.636 | 24.504 |
| 27 | 1229185 | BACHELOR OF SCIENCE (HORTICULTURE, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 28 | 1229187 | BACHELOR OF SCIENCE (AGRIBUSINESS MANAGEMENT, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 29 | 1229189 | BACHELOR OF SCIENCE IN HUMAN RESOURCE MANAGEMENT, WITH IT | PUBLIC | Ksh 183,600 | – | 27.071 | 24.176 |
| 30 | 1229190 | BACHELOR OF SCIENCE (NUTRITION AND DIETETICS, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 25.284 |
| 31 | 1229194 | BACHELOR OF SCIENCE (MEDICAL LABORATORY SCIENCES, WITH IT) | PUBLIC | Ksh 275,400 | – | 38.946 | 38.52 |
| 32 | 1229198 | BACHELOR OF APPLIED ECONOMICS, WITH IT | PUBLIC | Ksh 183,600 | – | 20.1 | 23.783 |
| 33 | 1229199 | BACHELOR OF ECONOMICS AND STATISTICS, WITH IT | PUBLIC | Ksh 183,600 | – | 24.969 | 30.666 |
| 34 | 1229208 | BACHELOR OF SCIENCE (COMPUTER SCIENCE & TECHNOLOGY) | PUBLIC | Ksh 306,000 | – | 19.223 | 24.866 |
| 35 | 1229213 | BACHELOR OF SCIENCE (ENVIRONMENTAL SCIENCE, WITH IT) | PUBLIC | Ksh 244,800 | – | 17.459 | 16.791 |
| 36 | 1229216 | BACHELOR OF SCIENCE ( AGRICULTURAL ECONOMICS, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 37 | 1229217 | BACHELOR OF ARTS (TEXTILE, FASHION DESIGN AND MERCHANDISING, WITH IT) | PUBLIC | Ksh 204,000 | – | 17.459 | 21.601 |
| 38 | 1229232 | BACHELOR OF SCIENCE (INFORMATION TECHNOLOGY) | PUBLIC | Ksh 306,000 | – | 29.849 | 31.732 |
| 39 | 1229238 | BACHELOR OF PSYCHOLOGY ( WITH IT) | PUBLIC | Ksh 153,000 | – | 25.767 | 26.732 |
| 40 | 1229245 | BACHELOR OF PROCUREMENT AND SUPPLY CHAIN MANAGEMENT | PUBLIC | Ksh 183,600 | – | 22.544 | 24.88 |
| 41 | 1229293 | BACHELOR OF SCIENCE (ANIMAL SCIENCE, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 42 | 1229295 | BACHELOR OF ARTS (INTERNATIONAL RELATIONS AND DIPLOMACY ,WITH IT) | PUBLIC | Ksh 153,000 | – | 26.452 | 29.376 |
| 43 | 1229299 | BACHELOR OF BUSINESS ENTREPRENEURSHIP , WITH IT | PUBLIC | Ksh 183,600 | – | 22.544 | 22.361 |
| 44 | 1229303 | BACHELOR OF ARTS (DEVELOPMENT STUDIES, WITH IT) | PUBLIC | Ksh 153,000 | – | 22.926 | 24.466 |
| 45 | 1229309 | BACHELOR OF SCIENCE (MATHEMATICS & COMPUTER SCIENCE) | PUBLIC | Ksh 244,800 | – | 19.223 | 27.983 |
| 46 | 1229317 | BACHELOR OF ARTS IN DESIGN (INTERIOR DESIGN, WITH IT) | PUBLIC | Ksh 204,000 | – | 23.168 | 27.424 |
| 47 | 1229324 | BACHELOR OF ARTS (KISWAHILI, WITH IT) | PUBLIC | Ksh 153,000 | – | 22.926 | 30.343 |
| 48 | 1229362 | BACHELOR OF EDUCATION (HOME SCIENCE , WITH IT) | PUBLIC | Ksh 244,800 | – | 28.759 | 29.035 |
| 49 | 1229385 | BACHELOR OF ARTS (COMMUNICATION & MEDIA TECHNOLOGY, WITH IT) | PUBLIC | Ksh 204,000 | – | 29.35 | 30.026 |
| 50 | 1229417 | BACHELOR OF SCIENCE (AGRICULTURE EDUCATION AND EXTENSION, WITH IT) | PUBLIC | Ksh 306,000 | – | 29.557 | 28.831 |
| 51 | 1229443 | BACHELOR OF ARTS (RELIGION, WITH IT) | PUBLIC | Ksh 122,400 | – | 19.956 | 27.108 |
| 52 | 1229509 | BACHELOR OF ARTS (FINE ART, WITH IT) | PUBLIC | Ksh 204,000 | – | 22.926 | 22.21 |
| 53 | 1229515 | BACHELOR OF SCIENCE (FISHERIES AND NATURAL RESOURCES, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 54 | 1229523 | BACHELOR OF ARTS (HISTORY AND ARCHAEOLOGY, WITH IT) | PUBLIC | Ksh 122,400 | – | 22.627 | 27.435 |
| 55 | 1229524 | BACHELOR OF ARTS (LITERATURE, WITH IT) | PUBLIC | Ksh 122,400 | – | 22.926 | 27.685 |
| 56 | 1229540 | BACHELOR OF ECONOMICS AND FINANCE, WITH IT | PUBLIC | Ksh 183,600 | – | 23.849 | 25.956 |
| 57 | 1229543 | BACHELOR OF SCIENCE (HEALTH RECORDS AND INFORMATION MANAGEMENT, WITH IT) | PUBLIC | Ksh 275,400 | – | 25.782 | 28.195 |
| 58 | 1229544 | BACHELOR OF ARTS (DISASTER MANAGEMENT, WITH IT) | PUBLIC | Ksh 153,000 | – | 22.926 | 26.746 |
| 59 | 1229551 | BACHELOR OF ARTS ( POLITICAL SCIENCE, WITH IT) | PUBLIC | Ksh 122,400 | – | 22.926 | 25.456 |
| 60 | 1229588 | BACHELOR OF SCIENCE (MATHEMATICS & ECONOMICS, WITH IT | PUBLIC | Ksh 244,800 | – | 20.1 | 25.022 |
| 61 | 1229590 | BACHELOR OF SCIENCE (CLIMATE CHANGE AND DEVELOPMENT, WITH IT) | PUBLIC | Ksh 244,800 | – | – | – |
| 62 | 1229591 | BACHELOR OF SCIENCE (MEDICAL BIOTECHNOLOGY, WITH IT) | PUBLIC | Ksh 275,400 | – | 26.516 | 27.737 |
| 63 | 1229593 | BACHELOR OF SCIENCE (AGRONOMY, WITH IT) | PUBLIC | Ksh 275,400 | – | 17.459 | 16.791 |
| 64 | 1229606 | BACHELOR OF ARTS (SOCIOLOGY AND ANTHROPOLOGY, WITH IT) | PUBLIC | Ksh 153,000 | – | 22.926 | 24.841 |
| 65 | 1229609 | BACHELOR OF SCIENCE (MATHEMATICS & BUSINESS STUDIES, WITH IT) | PUBLIC | Ksh 244,800 | – | 20.1 | 20.048 |
| 66 | 1229612 | BACHELOR OF SCIENCE (INFORMATION SYSTEMS) | PUBLIC | Ksh 306,000 | – | 22.544 | 22.361 |
| 67 | 1229621 | BACHELOR OF ARTS (LANGUAGE AND COMMUNICATION, WITH IT) | PUBLIC | Ksh 153,000 | – | 22.926 | 25.843 |
| 68 | 1229646 | BACHELOR OF ARTS (ECONOMICS, WITH IT) | PUBLIC | Ksh 183,600 | – | 20.1 | 20.048 |
| 69 | 1229654 | BACHELOR OF SCIENCE (ACCOUNTING & FINANCE, WITH IT) | PUBLIC | Ksh 183,600 | – | 28.099 | 30.596 |
| 70 | 1229684 | BACHELOR OF SCIENCE IN TRAVEL AND TOURISM MANAGEMENT | PUBLIC | Ksh 204,000 | – | 26.028 | 22.361 |
| 71 | 1229692 | BACHELOR OF SCIENCE (GEOGRAPHY AND NATURAL RESOURCE MANAGEMENT, WITH IT) | PUBLIC | Ksh 224,400 | – | 26.022 | 16.791 |
| 72 | 1229732 | BACHELOR OF SCIENCE (PUBLIC HEALTH, WITH IT) | PUBLIC | Ksh 275,400 | – | 32.999 | 33.142 |
| 73 | 1229765 | BACHELOR OF ARTS (URBAN AND REGIONAL PLANNING, WITH IT) | PUBLIC | Ksh 306,000 | – | 19.039 | 28.708 |
| 74 | 1229819 | BACHELOR OF SCIENCE (GEOSPATIAL INFORMATION SCIENCE, WITH IT) | PUBLIC | Ksh 244,800 | – | 17.802 | 26.403 |
